1) Comparison of three enveloping distribution sampling Hamiltonians for the estimation of multiple
free energy differences from a single simulation
Authors: Clara D. Christ, Wilfred F. Van Gunsteren
Journal of Computational Chemistry Special Issue: Free Energy Simulations: Methods and Applications
Volume 30, Issue 11, pages 1664–1679, August 2009
- DOI:
http://dx.doi.org/10.1002/jcc.21325
Authors: Gerhard Konig, Stefan Bruckner, Stefan Boresch
Journal of Computational Chemistry Special Issue: Free Energy Simulations: Methods and Applications
Volume 30, Issue 11, pages 1712–1718, August 2009
- DOI:
http://dx.doi.org/10.1002/jcc.21255
Authors: Xin Zhang, Artem B. Mamonov, Daniel M. Zuckerman
Journal of Computational Chemistry Special Issue: Free Energy Simulations: Methods and Applications
Volume 30, Issue 11, pages 1680–1691, August 2009
- DOI:
http://dx.doi.org/10.1002/jcc.21337
Authors: Jennifer L. Knight, Charles L. Brooks III
Journal of Computational Chemistry Special Issue: Free Energy Simulations: Methods and Applications
Volume 30, Issue 11, pages 1692–1700, August 2009
- DOI:
http://dx.doi.org/10.1002/jcc.21295
Authors: Harald Oberhofer, Christoph Dellago
Journal of Computational Chemistry Special Issue: Free Energy Simulations: Methods and Applications
Volume 30, Issue 11, pages 1726–1736, August 2009
- DOI:
http://dx.doi.org/10.1002/jcc.21290
the efficiency of replica exchange accelerated molecular dynamics
Authors: Mikolai Fajer, Robert V. Swift, J. Andrew McCammon
Journal of Computational Chemistry Special Issue: Free Energy Simulations: Methods and Applications
Volume 30, Issue 11, pages 1719–1725, August 2009
- DOI:
http://dx.doi.org/10.1002/jcc.21285
Authors: Eric Vanden-Eijnden
Journal of Computational Chemistry Special Issue: Free Energy Simulations: Methods and Applications
Volume 30, Issue 11, pages 1737–1747, August 2009
- DOI:
http://dx.doi.org/10.1002/jcc.21332
I. A practical comparison of the exponential formula,
thermodynamic integration, and Bennett's acceptance ratio method
Authors: Stefan Bruckner, Stefan Boresch
Journal of Computational Chemistry Volume 32, Issue 7, pages 1303–1319, May 2011
- DOI:
http://dx.doi.org/10.1002/jcc.21713
Authors: Gerhard Konig, Stefan Boresch
Journal of Computational Chemistry Volume 32, Issue 6, pages 1082–1090, 30 April 2011
- DOI:
http://dx.doi.org/10.1002/jcc.21687